Last modification: 14-Feb-2008
Table of Contents
1. Preface
1.1 Organization
1.2 Conventions
1.3 Other Documentation
2. Introduction
2.1 The
desktop beamline
2.1.1 Overview
2.1.2 Motors
2.1.3 Principles of Operation
2.1.4 Remote Control
"S"-Version
"M"-Version
"XL"-Version
2.2 General Remarks About Program
mar345dtb
2.3 General Remarks About Program
mar555dtb
2.4 Computer Requirements
3. Graphical User Interface
3.1 Basic Concepts
3.2 Environment
3.3 Command Line Options
3.4 User Interface
3.4.1 "Main" Window
3.4.1.1 Menu Bar
3.4.1.1.1 File Menu
3.4.1.1.2 Edit Menu
3.4.1.1.3 Align Menu
3.4.1.1.4 Image Menu
3.4.1.1.5 Video Menu
3.4.1.1.6 CSC Menu
3.4.1.1.7 Help Menu
3.4.1.2 Pages
3.4.1.2.1 Image
3.4.1.2.2 Edit
3.4.1.2.3 Align
3.4.1.2.4 Motors
3.4.1.2.5 Initialize
3.4.1.2.6 Misc.
3.4.1.2.6.1 Single Scan
3.4.1.2.6.2 Shutter
3.4.1.2.6.3 Remote Control
3.4.1.2.6.4 Settings for mar555 detector
3.4.1.2.7 Log
3.4.1.2.8 Crystal
3.4.1.2.9 CSC
3.4.1.3 Other Windows
3.4.1.3.1 "Progress" Window
3.4.1.3.2 "Image Header Info" Window
3.4.1.3.3 "Administrator" Window
3.4.1.3.4 "Hardware" Window
3.4.2 "Status" Window
3.4.2.1 Menu Bar
3.4.2.1.1 File Menu
3.4.2.1.2 Help Menu
3.4.2.2 Status Buttons
4. Image Display
4.1 Introduction
4.2 Image Menu
4.3 Toolbox
4.4 Image Area
4.4.2 Mouse Button Functions
4.4.3 Information Areas
4.5 "File" Window
4.6 "Colors" Window
4.7 3-D Plot
4.8 "Cross-section" Window
5. Alignment
5.1 Introduction
5.2 Work Areas
5.2.1 Align Menu
5.2.1.1 Load beam data
5.2.1.2 Drive to latest maximum
5.2.2 Status Area
5.2.3 Input Parameter Area
5.2.4 Plot Area
5.3 Alignment Tasks
5.3.1 Find Beam
5.3.2 Optimize Beam
5.3.3 Profile Beam
5.3.4 Shape Beam
5.3.5 Adjust ADC
5.3.6 Manual Operations
6. Edit
6.1 Introduction
6.2 Edit Menu
6.2.1 Description
6.2.2 Load Parameters
6.2.3 Save Parameters
6.2.4 Copy Parameters
6.3 Selecting Data Sets
6.4 Directories, Names and Formats
6.5 Exposure Settings
6.6 Goniometer Settings
6.7 Collimator and Beam Settings
6.8 Options
6.9 Using Shell Commands
6.10 Sample Changer Settings
7. Crystal
7.1 Introduction
7.2 Video Menu
7.3 Video
7.4 Motor Positions
7.5 Crystal Rotation
7.6 Crystal Translation
7.7 Crystal Centering
7.7.1 Find crystal
7.7.2 Center crystal (automatic)
8. CSC
8.1 Introduction
8.1.1 Principles of Operation
8.2 CSC Menu
8.3 CSC Operations
8.3.1 Change Sample
8.3.2 Load Sammple
8.3.3 Unload Sammple
8.3.4 Give Vial
8.3.5 Take Vial
8.3.6 Move sample to stored xyz
8.3.7 Shift Corrections
8.4 Initialize
8.5 Csc Options
8.6 Sample Status
9. Input
9.1 Overview
9.2 Configuration File
9.2.1 Keywords
9.2.1.1 General
9.2.1.2 Keywords for
dtb
9.2.1.3 Keywords for
mar345
9.2.2 Example
9.3 Calibration Files
9.4 Parameter File
9.4.1 Keywords
9.4.2 Example
9.5 Command File
9.6 Shell Script
9.7 Images
9.8 Carousel File
10. Output
10.1 Overview
10.2 Lock File
10.3 Message File
10.4 Log File
10.5 Spy Files
10.6 Statistics File
10.7 Parameter File
10.8 Status File
10.9 Beam History File
10.10 Beam Scan File
10.11 Beam Profile File
10.13 Beamplot File
10.14 mar2thumb: Thumbnail Conversion Script
10.14 Data Images
10.15 ASCII Summary File
10.16 HTML Summary File
10.17 Automar Sync File
10.18 Errors File
10.19 Images used for Crystal Finding
10.20 Carousel File
11. Appendix
11.1
dtb
Firmware Update
11.1.1 Firmware Distribution
11.1.1.1 Application Software (APPL)
11.1.1.2 Operating System (RTOS)
11.1.2 Application Software Update
11.1.2.1 Update Procedure for Firmware Versions ≥ 4.0
11.1.2.2 Update Procedure for Firmware Versions ≤ 3.5
11.1.3 Operating System Update
11.1.4 List Firmware Versions
11.1.5 Update of Disks R2, R3 and R5
Last modification: 14-Feb-2008